PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511128.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 322aa    MW: 35733 Da    PI: 9.8619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v ++G+g W+tI +          R+  ++k++w++ 
   XP_016511128.1  5 KLKWTPEEEVALRAGVLKYGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRNM 56
                     689**********************************88***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.313161IPR017930Myb domain
SuperFamilySSF466892.51E-15271IPR009057Homeodomain-like
SMARTSM007178.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-13556IPR009057Homeodomain-like
PfamPF002491.3E-7556IPR001005SANT/Myb domain
CDDcd116608.55E-18757No hitNo description
SMARTSM005262.1E-12118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-16119197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.879120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.4E-14123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-7125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGAPKLKWTP EEEVALRAGV LKYGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMTVMA  60
NGWGSREKAK LALKRMIQAP MQGESSAAVT SEAESDAEIP EAWPATTSRG SPQHGGSRRS  120
ILRLDNLIME AISNLNEPGG SYQATISTYI EDQYWETPNI RRLLSAKLKY LTATGKLIKM  180
KRKYKVAPKL TFANKRRNLP LPLLDSSQRI CSKVDQDDIN MLTRSQIDLD LEKMKNMSPQ  240
EAAAAAAQAV AEADTATAEA AEAARKAEAA AAEAEAAQAF AEAAMKTLQE RSIPRMVRHF  300
PLSFLSFLFP FPLSLESFWV NV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511128.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X3
RefseqXP_016511130.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X3
SwissprotQ8VWK45e-89TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-126M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595421e-125(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-82telomere repeat binding factor 1